Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015887675.1_cds_XP_016442125.1_37419
CDS Infomation

[gene=LOC107767588] [db_xref=GeneID:107767588] [protein=MACPF domain-containing protein At4g24290-like] [protein_id=XP_016442125.1] [location=complement(join(19271..19951,21172..21338,21867..22053,22154..22222,23154..23355,23912..24150,24578..24838))] [gbkey=CDS]
Sequence

ATGGCGTTGAAGTTACCTGCTGCTGAAGCAGCTAAGGTTGCGATTGAGTCAATAGGATGT
GGATATGATATATCATTGGACTTGAGGCTCAAGTATTGTAAAGGTCATCCGGGTAATAGG
CGTTTAATTGAAATTGATGAAGATGAGGGCCGGGAGGTTGTGCTTCCTGGTGGTATTTCA
ATCCCTAATGTGTCAAAATCTATCAAATGCGATAAAGGAGAACTCACCAGGTTTCGCTCT
GATGTTCTTTCTTTCCAGCAGATGTCAGAGCAGTTCAATCAGGAAGTATCCGTGACTGGT
AAAATTCCTTCAGGGCTCTTCAATACTATGTTCGAGTTTTCTGGTTCTTGGCAGAAGGAT
GCAGCATACACCAAGACCCTTGCTTTTGATGGTGTGTTCATCACATTATACTCTGTTGCT
CTAGAAAAATCTCAAATGGTGCTGTGCGATTATGTTAAAAAGGAAGTTCCATCAACATGG
GATCCTGCGGCATTAGCAAGGTTTATTGAAAAATTTGGTACTCATGTCATTGTTGGTATA
AAGATGGGAGGAAAGGATGTAATATATATGAAACAGCAGCACTCCTCCTCCCTTCTCCCT
GCGGACGTGCAAAAGCGTTTGAAGGCAATGGCAGATAAGAGGTTTTCAGGTGCAAATGAA
CAAGGCGGAATAGGATCTGAGCAGGCACATCAGAACGGGAAGTTTGAGATCAGGGAGCAC
CGGCTAAGGTTTGCTGATCCCAACATATCAGGTTCATATACACATAAGGAGGATACTGTT
AGCATTTGCAAGAGGAGGGGTGGAGGTGATAGCAGAGGCTTGACGCATAATCAGTGGTTA
CAAAGTGTACATCAGGAGCCTGATGTGATCTCAATGTCCTTCATCCCTATCACCTCACTG
TTGAGTGGCATCTCAGGAAGTGGATTTTTGAGTCATGCTATAAATCTGTACTTGCGCTAT
AAACCACCAATTGAAGAGCTTCACCAGTTTTTGGAATTTCAGCTGCCAAGGCAGTGGGCA
CCGATCTTCGGTGATCTTCCGCTTGGTCCTCAGAGAAGGCATTCAAATTTTGCATCTTTG
CAGTTTAGTTTATTGGGTCCCAGGCTTTATGTGAACACCACTCCGGTTGATGTTGGCAAG
AGGCCAGTGACTGGACTTCGTTTGTATCTTGAAGGTAAAAGGAGTAACCGCTTAGCTGTG
CATTTGCAGCATCTCTCATCTCTTCCTAAAGTCTTCCAGCTTGAAGATGATCCAAATGGA
AATTTTCAACGAGAATCATATGATCGCAAATACTATGAAAAAGTTCAATGGAAGAACTTT
TCTCATGTCTGCACTGCTCCTGTTGAATCTTATGAGGATCTTAACATTGTTACTGGAGCA
CAATTGGAAGTTGGGGACTGCGGGTTTAAAAAGGTCCTCTTTCTGAGACTCCGTTTCTCG
ACTGTCATGGGAGCTACTATGGTAAAGCACCCGGAGTGGGATGGTTCCCCTGGGTTGGCC
CGCAAATCTGGACTGATATCAACTCTCATTAGCCAGCACTTTACATCAGTTCAGAAGCCA
CCTCCACAGCCAGCTGATGTGAACATAAATTCCGCCATTTACCCTGGTGGTCCTCCCGTT
CCTGTGCAAGCCCCTAAGCTCTTGAAATTTGTCGATACTACTGAGATGACTCGAGGACCA
CAAGAACCTCCCGGTTATTGGGTTGTTTCCGGTGCAAGGCTTATGGTTGAGAAAGGAAGG
ATCTGTCTGAGGGTCAAATATTCCTTGCTTACTGTAATACAACCCGACGATGAAATACCA
GAGTAA

Peptide Sequence

PEP ID

XP_016442125.1
PEP Infomation

PREDICTED: MACPF domain-containing protein At4g24290-like [Nicotiana tabacum]
Sequence

MALKLPAAEAAKVAIESIGCGYDISLDLRLKYCKGHPGNRRLIEIDEDEGREVVLPGGIS
IPNVSKSIKCDKGELTRFRSDVLSFQQMSEQFNQEVSVTGKIPSGLFNTMFEFSGSWQKD
AAYTKTLAFDGVFITLYSVALEKSQMVLCDYVKKEVPSTWDPAALARFIEKFGTHVIVGI
KMGGKDVIYMKQQHSSSLLPADVQKRLKAMADKRFSGANEQGGIGSEQAHQNGKFEIREH
RLRFADPNISGSYTHKEDTVSICKRRGGGDSRGLTHNQWLQSVHQEPDVISMSFIPITSL
LSGISGSGFLSHAINLYLRYKPPIEELHQFLEFQLPRQWAPIFGDLPLGPQRRHSNFASL
QFSLLGPRLYVNTTPVDVGKRPVTGLRLYLEGKRSNRLAVHLQHLSSLPKVFQLEDDPNG
NFQRESYDRKYYEKVQWKNFSHVCTAPVESYEDLNIVTGAQLEVGDCGFKKVLFLRLRFS
TVMGATMVKHPEWDGSPGLARKSGLISTLISQHFTSVQKPPPQPADVNINSAIYPGGPPV
PVQAPKLLKFVDTTEMTRGPQEPPGYWVVSGARLMVEKGRICLRVKYSLLTVIQPDDEIP
E

Transcript Sequence

Gene sequence data has not been registered.